RNA Links:
Miscellaneous Links:
RNA Society
NCBI
ensembl
RNABase
CBCB at UM
Chris Burge's lab
Chris Lee's lab
M. Zhang's lab
The Black lab

RNA Companies:
ExonHit
Ambion

Community:
Genefinding on Yahoo!
Yi Xing's blog
Steve Mount's blog

Steve's Links:
Home Page
Research
Readings
email - Steve Mount
Model Organisms
Quick Links
Conferences
Journals
BSCI410 (class)

Links

Many of these belong on the other pages, and I will eventually get around to working them into the narrative descriptions on those pages, but it's easier to just put them into the list here, so this list is often more up to date.

ASD -- EBI's Alternative Splicing Database. In fact, three databases are available: AltSplice , AltExtron , and AEdb .

MAASE -- The Manually Annotated Alternatively Spliced Events database system is a unique alternative splicing information resource designed specifically with experimentalists in mind.

genes.mit.edu -- Burge lab web servers, including:

• GENSCAN -- genefinding
• GenomeScan -- incorporates protein homology
• ExonScan -- exons
• MiRscan -- microRNAs
• TargetScan -- prediction of microRNA targets
• ACEScan [ Genes ] [ Splicing motifs ] -- human and mouse alternative splicing events
• MaxEnt [ Build ] [ Score splice sites ] -- short motifs (Maximum Entropy)
• RESCUE-ESE -- exonic splicing enhancers
• FAS-ESS -- exonic splicing silencers
• GENOA -- spliced alignment (human)
• McPromoter -- Markov chain promoter prediction
• Pictogram -- frequency (not information) pictograms

SpliceDB -- Splicing data at softberry.

AEDB -- Alternative Exon Database (Zhang lab at CSHL).

ASIP -- Alternative Splicing in Plants, part of the Plant Genome Database (PlantGDB).

Splice -- Automated splice site analysis (mammalian genes, based on information content).

Readings -- Annotated readings realated to Mount lab research