RNA Links:
Miscellaneous Links:
RNA Society
NCBI
ensembl
RNABase
CBCB at UM
Chris Burge's lab
Chris Lee's lab
M. Zhang's lab
The Black lab

RNA Companies:
ExonHit
Ambion

Community:
Genefinding on Yahoo!
Yi Xing's blog
Steve Mount's blog

Steve's Links:
Home Page
Research
Readings
email - Steve Mount
Model Organisms
Quick Links
Conferences
Journals
BSCI410 (class)

These pages, collectively accessible as www.RNAinfo.org, are a bit out of date right now (April, 2005) but under active revision.

Genefinding

A list of genefinders:

GENSCAN - GENSCAN is a genefinder developed by Chris Burge.

GlimmerM - limmerM is a gene finder developed specifically for small eukaryotes with a gene density of around 20%.

Genie - Genie is a gene identification tool developed at the University of California, Santa Cruz, that uses Hidden Markov Models to find genes.

FGENES - This genefinder is available through The Sanger Center's Computational Genomics Group.

GRAIL - The Gene Recognition and Assembly Internet Link is available through the Oak Ridge National Laboratory Computational Biosciences Section

HMMGene - This genefinder is available through the Center for Biological Sequence Analysis at the Department of Biotechnology, The Technical University of Denmark.