RNAinfo: Splicing signals Genefinding Splice site consensus
ESEs Genome Annotation Alternative Splicing RNA links





RNA Links:
Miscellaneous Links:
RNA Society
NCBI
ensembl
RNABase
CBCB at UM
Chris Burge's lab
Chris Lee's lab
M. Zhang's lab
The Black lab

RNA Companies:
ExonHit
Ambion

Community:
Genefinding on Yahoo!
Yi Xing's blog
Steve Mount's blog

Steve's Links:
Home Page
Research
Readings
email - Steve Mount
Model Organisms
Quick Links
Conferences
Journals
BSCI410 (class)


This is Steve Mount's web page for gene annotation and splice site selection. The page was inspired by my review article in the American Journal of Human Genetics (PubMed; Journal)

ESEs

Arabidopsis 2010: pre-mRNA splicing, Steve Mount's rearch on ESEs

There are three ESE web servers:

RESCUE-ESE (Burge lab, based on RESCUE-ESE, which is a computational method)

ESEfinder (Zhang lab, based on experimental results with nuclear extracts containing a single SR protein)

SEE-ESE (Mount and Salzberg labs, based on computational prediction and experimental results in Arabidopsis)

Literature on ESEs can be found at the Mount lab reading room.