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RNA Links:
Miscellaneous Links:
RNA Society
NCBI
ensembl
CBCB at UM
RNABase
Chris Burge's lab
Chris Lee's lab
M. Zhang's lab
The Black lab
RNA Companies:
ExonHit
Ambion
Community:
Genefinding on Yahoo!
Yi Xing's blog
Steve Mount's blog
Steve's Links:
Home Page
Research
Readings
email - Steve Mount
Model Organisms
Quick Links
Conferences
Journals
BSCI410 (class)
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This is Steve Mount's web page for gene annotation and splice site selection. The page was inspired by my review article in the American Journal of Human Genetics (PubMed; Journal)
I provide links on gene annotation (including cDNA alignment), genefinding, splicing signals (including splice site prediction), and specific comments on splice site consensus, ESEs and microexons. These pages, collectively accessible as www.RNAinfo.org, are a bit out of date right now (April, 2005) but under active revision.
Alternative Splicing
PALS Putative Alternative Splicing database. Searchable, limited to mouse and human.
ASDB Alternative Splicing Database -- based on GenBank entries.
HASDB Human Alternative Splicing Database. Chris Lee. UCLA. 6201 alternative splice relationships in human genes identified through a genome-wide analysis of expressed sequence tags (ESTs).
Splicing anomalies in Arabidopsis (part of TIGR's Arabidopsis annotation pages). Alternative splicing events are put into categories based on alignment of full-length cDNA sequences to the genome.
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