##gff-version 3
#species: Drosophila yakuba
#assembly-id: CAF1
#annotation-group: MAKA (see Mount, Gotea, Lin, Hernandez and Makalowski. 2007. "Spliceosomal small nuclear RNA genes in 11 insect genomes." RNA 13:5-14.)
#algorithm: SPR (SPliceosomal RNA; BLASTN 2.2.10 + MFOLD 3.1.2 + manual)
#authors: smount@umd.edu, vgotea@psu.edu, cxl46@psu.edu, wojtek@psu.edu
dyakrec_chr2L	blastn+mfold+man	snRNA	885792	885955	.	+	.	ID=Dyak\GE_MAKA_SPR_26000418;Name=snRNA:U1:1
dyakrec_chr2L	blastn+mfold+man	snRNA	886692	886855	.	-	.	ID=Dyak\GE_MAKA_SPR_26000419;Name=snRNA:U1:2
dyakrec_chr3R	blastn+mfold+man	snRNA	1092067	1092231	.	+	.	ID=Dyak\GE_MAKA_SPR_26000420;Name=snRNA:U1:3
dyakrec_chr3R	blastn+mfold+man	snRNA	1094109	1094272	.	-	.	ID=Dyak\GE_MAKA_SPR_26000421;Name=snRNA:U1:4
dyakrec_chr3R	blastn+mfold+man	snRNA	1099687	1099850	.	+	.	ID=Dyak\GE_MAKA_SPR_26000422;Name=snRNA:U1:5
dyakrec_chr3R	blastn+mfold+man	snRNA	1103101	1103264	.	-	.	ID=Dyak\GE_MAKA_SPR_26000423;Name=snRNA:U1:6
dyakrec_chr3R	blastn+mfold+man	snRNA	1139894	1140057	.	-	.	ID=Dyak\GE_MAKA_SPR_26000424;Name=snRNA:U1:7
dyakrec_chr3R	blastn+mfold+man	snRNA	20542966	20543129	.	+	.	ID=Dyak\GE_MAKA_SPR_26000425;Name=snRNA:U1:8
dyakrec_chr3R	blastn+mfold+man	snRNA	20544499	20544662	.	+	.	ID=Dyak\GE_MAKA_SPR_26000426;Name=snRNA:U1:9
dyakrec_chr3R	blastn+mfold+man	snRNA	20559569	20559732	.	-	.	ID=Dyak\GE_MAKA_SPR_26000427;Name=snRNA:U1:10
dyakrec_chr3R	blastn+mfold+man	snRNA	27621662	27621825	.	-	.	ID=Dyak\GE_MAKA_SPR_26000428;Name=snRNA:U1:11
dyakrec_chr3L	blastn+mfold+man	snRNA	4450856	4451131	.	-	.	ID=Dyak\GE_MAKA_SPR_26000429;Name=snRNA:U11:1
dyakrec_chr3L	blastn+mfold+man	snRNA	17417970	17418202	.	-	.	ID=Dyak\GE_MAKA_SPR_26000430;Name=snRNA:U12:1
dyakrec_chr2L	blastn+mfold+man	snRNA	9641993	9642184	.	+	.	ID=Dyak\GE_MAKA_SPR_26000431;Name=snRNA:U2:1
dyakrec_chr2L	blastn+mfold+man	snRNA	11094471	11094662	.	+	.	ID=Dyak\GE_MAKA_SPR_26000432;Name=snRNA:U2:2
dyakrec_chr2L	blastn+mfold+man	snRNA	15871487	15871677	.	-	.	ID=Dyak\GE_MAKA_SPR_26000433;Name=snRNA:U2:3
dyakrec_chr2R	blastn+mfold+man	snRNA	6274127	6274317	.	+	.	ID=Dyak\GE_MAKA_SPR_26000434;Name=snRNA:U2:4
dyakrec_chr2R	blastn+mfold+man	snRNA	6277391	6277581	.	+	.	ID=Dyak\GE_MAKA_SPR_26000435;Name=snRNA:U2:5
dyakrec_chr2R	blastn+mfold+man	snRNA	6576772	6576964	.	-	.	ID=Dyak\GE_MAKA_SPR_26000436;Name=snRNA:U2:6
dyakrec_chr3L	blastn+mfold+man	snRNA	10683761	10683952	.	-	.	ID=Dyak\GE_MAKA_SPR_26000437;Name=snRNA:U2:7
dyakrec_chr2L	blastn+mfold+man	snRNA	13626408	13626555	.	-	.	ID=Dyak\GE_MAKA_SPR_26000438;Name=snRNA:U4:1
dyakrec_chr2R	blastn+mfold+man	snRNA	1558816	1558958	.	+	.	ID=Dyak\GE_MAKA_SPR_26000439;Name=snRNA:U4:2
dyakrec_chr2R	blastn+mfold+man	snRNA	6272156	6272297	.	+	.	ID=Dyak\GE_MAKA_SPR_26000440;Name=snRNA:U4:3
dyakrec_chr3R	blastn+mfold+man	snRNA	1370865	1371024	.	-	.	ID=Dyak\GE_MAKA_SPR_26000441;Name=snRNA:U4atac:1
dyakrec_chrU	blastn+mfold+man	snRNA	17677041	17677200	.	+	.	ID=Dyak\GE_MAKA_SPR_26000442;Name=snRNA:U4atac:2
dyakrec_chr2L	blastn+mfold+man	snRNA	3043636	3043765	.	+	.	ID=Dyak\GE_MAKA_SPR_26000443;Name=snRNA:U5:1
dyakrec_chr2L	blastn+mfold+man	snRNA	3044118	3044247	.	+	.	ID=Dyak\GE_MAKA_SPR_26000444;Name=snRNA:U5:2
dyakrec_chr2L	blastn+mfold+man	snRNA	9679967	9680092	.	+	.	ID=Dyak\GE_MAKA_SPR_26000445;Name=snRNA:U5:3
dyakrec_chr2R	blastn+mfold+man	snRNA	6273360	6273486	.	-	.	ID=Dyak\GE_MAKA_SPR_26000446;Name=snRNA:U5:4
dyakrec_chr2R	blastn+mfold+man	snRNA	6276743	6276870	.	-	.	ID=Dyak\GE_MAKA_SPR_26000447;Name=snRNA:U5:5
dyakrec_chr2R	blastn+mfold+man	snRNA	6284582	6284709	.	+	.	ID=Dyak\GE_MAKA_SPR_26000448;Name=snRNA:U5:6
dyakrec_chr2R	blastn+mfold+man	snRNA	6577445	6577572	.	+	.	ID=Dyak\GE_MAKA_SPR_26000449;Name=snRNA:U5:7
dyakrec_chr3L	blastn+mfold+man	snRNA	8855622	8855745	.	-	.	ID=Dyak\GE_MAKA_SPR_26000450;Name=snRNA:U5:8
dyakrec_chr3R	blastn+mfold+man	snRNA	26097529	26097635	.	-	.	ID=Dyak\GE_MAKA_SPR_26000451;Name=snRNA:U6:1
dyakrec_chr3R	blastn+mfold+man	snRNA	26098925	26099031	.	-	.	ID=Dyak\GE_MAKA_SPR_26000452;Name=snRNA:U6:2
dyakrec_chr3R	blastn+mfold+man	snRNA	26098288	26098394	.	-	.	ID=Dyak\GE_MAKA_SPR_26000453;Name=snRNA:U6:3
dyakrec_chr2L	blastn+mfold+man	snRNA	11025867	11025964	.	+	.	ID=Dyak\GE_MAKA_SPR_26000454;Name=snRNA:U6atac:1