##gff-version 3
#species: Drosophila yakuba
#assembly-id: CAF1
#annotation-group: MAKA (see Mount, Gotea, Lin, Hernandez and Makalowski. 2007. "Spliceosomal small nuclear RNA genes in 11 insect genomes." RNA 13:5-14.)
#algorithm: SPR (SPliceosomal RNA; BLASTN 2.2.10 + MFOLD 3.1.2 + manual)
#authors: smount@umd.edu, vgotea@psu.edu, cxl46@psu.edu, wojtek@psu.edu
dyak_chr2L	blastn+mfold+man	snRNA	886486	886649	.	+	.	ID=Dyak\GE_MAKA_SPR_26000381;Name=snRNA:U1:1
dyak_chr2L	blastn+mfold+man	snRNA	887386	887549	.	-	.	ID=Dyak\GE_MAKA_SPR_26000382;Name=snRNA:U1:2
dyak_chr3R	blastn+mfold+man	snRNA	1099121	1099284	.	+	.	ID=Dyak\GE_MAKA_SPR_26000383;Name=snRNA:U1:3
dyak_chr3R	blastn+mfold+man	snRNA	1101599	1101762	.	-	.	ID=Dyak\GE_MAKA_SPR_26000384;Name=snRNA:U1:4
dyak_chr3R	blastn+mfold+man	snRNA	1107177	1107340	.	+	.	ID=Dyak\GE_MAKA_SPR_26000385;Name=snRNA:U1:5
dyak_chr3R	blastn+mfold+man	snRNA	1112001	1112164	.	-	.	ID=Dyak\GE_MAKA_SPR_26000386;Name=snRNA:U1:6
dyak_chr3R	blastn+mfold+man	snRNA	1148794	1148957	.	-	.	ID=Dyak\GE_MAKA_SPR_26000387;Name=snRNA:U1:7
dyak_chr3R	blastn+mfold+man	snRNA	20559091	20559254	.	+	.	ID=Dyak\GE_MAKA_SPR_26000388;Name=snRNA:U1:8
dyak_chr3R	blastn+mfold+man	snRNA	20560624	20560787	.	+	.	ID=Dyak\GE_MAKA_SPR_26000389;Name=snRNA:U1:9
dyak_chr3R	blastn+mfold+man	snRNA	20575694	20575857	.	-	.	ID=Dyak\GE_MAKA_SPR_26000390;Name=snRNA:U1:10
dyak_chr3R	blastn+mfold+man	snRNA	27641169	27641332	.	-	.	ID=Dyak\GE_MAKA_SPR_26000391;Name=snRNA:U1:11
dyak_chr3L	blastn+mfold+man	snRNA	4452130	4452405	.	-	.	ID=Dyak\GE_MAKA_SPR_26000392;Name=snRNA:U11:1
dyak_chr3L	blastn+mfold+man	snRNA	17423681	17423913	.	-	.	ID=Dyak\GE_MAKA_SPR_26000393;Name=snRNA:U12:1
dyak_chr2L	blastn+mfold+man	snRNA	9643600	9643791	.	+	.	ID=Dyak\GE_MAKA_SPR_26000394;Name=snRNA:U2:1
dyak_chr2L	blastn+mfold+man	snRNA	11096499	11096690	.	+	.	ID=Dyak\GE_MAKA_SPR_26000395;Name=snRNA:U2:2
dyak_chr2L	blastn+mfold+man	snRNA	15873996	15874186	.	-	.	ID=Dyak\GE_MAKA_SPR_26000396;Name=snRNA:U2:3
dyak_chr2R	blastn+mfold+man	snRNA	6275376	6275566	.	+	.	ID=Dyak\GE_MAKA_SPR_26000397;Name=snRNA:U2:4
dyak_chr2R	blastn+mfold+man	snRNA	6278640	6278830	.	+	.	ID=Dyak\GE_MAKA_SPR_26000398;Name=snRNA:U2:5
dyak_chr2R	blastn+mfold+man	snRNA	6578024	6578216	.	-	.	ID=Dyak\GE_MAKA_SPR_26000399;Name=snRNA:U2:6
dyak_chr3L	blastn+mfold+man	snRNA	10687599	10687790	.	-	.	ID=Dyak\GE_MAKA_SPR_26000400;Name=snRNA:U2:7
dyak_chr2L	blastn+mfold+man	snRNA	13628420	13628567	.	-	.	ID=Dyak\GE_MAKA_SPR_26000401;Name=snRNA:U4:1
dyak_chr2R	blastn+mfold+man	snRNA	1560436	1560578	.	+	.	ID=Dyak\GE_MAKA_SPR_26000402;Name=snRNA:U4:2
dyak_chr2R	blastn+mfold+man	snRNA	6273405	6273546	.	+	.	ID=Dyak\GE_MAKA_SPR_26000403;Name=snRNA:U4:3
dyak_chr3R	blastn+mfold+man	snRNA	1380963	1381122	.	-	.	ID=Dyak\GE_MAKA_SPR_26000404;Name=snRNA:U4atac:1
dyak_chrU	blastn+mfold+man	snRNA	17675579	17675738	.	+	.	ID=Dyak\GE_MAKA_SPR_26000405;Name=snRNA:U4atac:2
dyak_chr2L	blastn+mfold+man	snRNA	3044332	3044461	.	+	.	ID=Dyak\GE_MAKA_SPR_26000406;Name=snRNA:U5:1
dyak_chr2L	blastn+mfold+man	snRNA	3044814	3044943	.	+	.	ID=Dyak\GE_MAKA_SPR_26000407;Name=snRNA:U5:2
dyak_chr2L	blastn+mfold+man	snRNA	9681574	9681699	.	+	.	ID=Dyak\GE_MAKA_SPR_26000408;Name=snRNA:U5:3
dyak_chr2R	blastn+mfold+man	snRNA	6274609	6274735	.	-	.	ID=Dyak\GE_MAKA_SPR_26000409;Name=snRNA:U5:4
dyak_chr2R	blastn+mfold+man	snRNA	6277992	6278119	.	-	.	ID=Dyak\GE_MAKA_SPR_26000410;Name=snRNA:U5:5
dyak_chr2R	blastn+mfold+man	snRNA	6285834	6285961	.	+	.	ID=Dyak\GE_MAKA_SPR_26000411;Name=snRNA:U5:6
dyak_chr2R	blastn+mfold+man	snRNA	6578697	6578824	.	+	.	ID=Dyak\GE_MAKA_SPR_26000412;Name=snRNA:U5:7
dyak_chr3L	blastn+mfold+man	snRNA	8856725	8856848	.	-	.	ID=Dyak\GE_MAKA_SPR_26000413;Name=snRNA:U5:8
dyak_chr3R	blastn+mfold+man	snRNA	26116476	26116582	.	-	.	ID=Dyak\GE_MAKA_SPR_26000414;Name=snRNA:U6:1
dyak_chr3R	blastn+mfold+man	snRNA	26117235	26117341	.	-	.	ID=Dyak\GE_MAKA_SPR_26000415;Name=snRNA:U6:2
dyak_chr3R	blastn+mfold+man	snRNA	26117872	26117978	.	-	.	ID=Dyak\GE_MAKA_SPR_26000416;Name=snRNA:U6:3
dyak_chr2L	blastn+mfold+man	snRNA	11027895	11027992	.	+	.	ID=Dyak\GE_MAKA_SPR_26000417;Name=snRNA:U6atac:1