##gff-version 3
#species: Drosophila simulans
#assembly-id: CAF1
#annotation-group: MAKA (see Mount, Gotea, Lin, Hernandez and Makalowski. 2007. "Spliceosomal small nuclear RNA genes in 11 insect genomes." RNA 13:5-14.)
#algorithm: SPR (SPliceosomal RNA; BLASTN 2.2.10 + MFOLD 3.1.2 + manual)
#authors: smount@umd.edu, vgotea@psu.edu, cxl46@psu.edu, wojtek@psu.edu
dsim_chr2L	blastn+mfold+man	snRNA	890076	890239	.	-	.	ID=Dsim\GD_MAKA_SPR_26000281;Name=snRNA:U1:1
dsim_chr2h_random	blastn+mfold+man	snRNA	2764575	2764737	.	+	.	ID=Dsim\GD_MAKA_SPR_26000282;Name=snRNA:U1:2
dsim_chr3R	blastn+mfold+man	snRNA	811730	811893	.	+	.	ID=Dsim\GD_MAKA_SPR_26000283;Name=snRNA:U1:3
dsim_chr3R	blastn+mfold+man	snRNA	818984	819147	.	-	.	ID=Dsim\GD_MAKA_SPR_26000284;Name=snRNA:U1:4
dsim_chr3R	blastn+mfold+man	snRNA	19483545	19483708	.	+	.	ID=Dsim\GD_MAKA_SPR_26000285;Name=snRNA:U1:5
dsim_chr3R	blastn+mfold+man	snRNA	19485040	19485203	.	+	.	ID=Dsim\GD_MAKA_SPR_26000286;Name=snRNA:U1:6
dsim_chr3R	blastn+mfold+man	snRNA	19499846	19500009	.	-	.	ID=Dsim\GD_MAKA_SPR_26000287;Name=snRNA:U1:7
dsim_chrU	blastn+mfold+man	snRNA	11152178	11152341	.	-	.	ID=Dsim\GD_MAKA_SPR_26000288;Name=snRNA:U1:8
dsim_chr3L_random	blastn+mfold+man	snRNA	193015	193287	.	-	.	ID=Dsim\GD_MAKA_SPR_26000289;Name=snRNA:U11:1
dsim_chr3L	blastn+mfold+man	snRNA	15977631	15977866	.	+	.	ID=Dsim\GD_MAKA_SPR_26000290;Name=snRNA:U12:1
dsim_chr2L	blastn+mfold+man	snRNA	13006270	13006461	.	-	.	ID=Dsim\GD_MAKA_SPR_26000291;Name=snRNA:U2:1
dsim_chr2L	blastn+mfold+man	snRNA	13028338	13028529	.	-	.	ID=Dsim\GD_MAKA_SPR_26000292;Name=snRNA:U2:2
dsim_chr2L	blastn+mfold+man	snRNA	19471767	19471958	.	+	.	ID=Dsim\GD_MAKA_SPR_26000293;Name=snRNA:U2:3
dsim_chr2L	blastn+mfold+man	snRNA	19474835	19475026	.	-	.	ID=Dsim\GD_MAKA_SPR_26000294;Name=snRNA:U2:4
dsim_chr2L_random	blastn+mfold+man	snRNA	496052	496243	.	+	.	ID=Dsim\GD_MAKA_SPR_26000295;Name=snRNA:U2:5
dsim_chrX	blastn+mfold+man	snRNA	12469069	12469260	.	+	.	ID=Dsim\GD_MAKA_SPR_26000296;Name=snRNA:U2:6
dsim_chr2L	blastn+mfold+man	snRNA	5358902	5359049	.	+	.	ID=Dsim\GD_MAKA_SPR_26000297;Name=snRNA:U4:1
dsim_chr2L	blastn+mfold+man	snRNA	19469879	19470020	.	+	.	ID=Dsim\GD_MAKA_SPR_26000298;Name=snRNA:U4:2
dsim_chr2L	blastn+mfold+man	snRNA	20798484	20798626	.	-	.	ID=Dsim\GD_MAKA_SPR_26000299;Name=snRNA:U4:3
dsim_chr3R	blastn+mfold+man	snRNA	1045971	1046130	.	-	.	ID=Dsim\GD_MAKA_SPR_26000300;Name=snRNA:U4atac:1
dsim_chr2L	blastn+mfold+man	snRNA	2990157	2990286	.	+	.	ID=Dsim\GD_MAKA_SPR_26000301;Name=snRNA:U5:1
dsim_chr2L	blastn+mfold+man	snRNA	13028817	13028943	.	+	.	ID=Dsim\GD_MAKA_SPR_26000302;Name=snRNA:U5:2
dsim_chr2L	blastn+mfold+man	snRNA	15461139	15461265	.	-	.	ID=Dsim\GD_MAKA_SPR_26000303;Name=snRNA:U5:3
dsim_chr2L	blastn+mfold+man	snRNA	19471090	19471216	.	-	.	ID=Dsim\GD_MAKA_SPR_26000304;Name=snRNA:U5:4
dsim_chr2L	blastn+mfold+man	snRNA	19476385	19476512	.	+	.	ID=Dsim\GD_MAKA_SPR_26000305;Name=snRNA:U5:5
dsim_chr3L	blastn+mfold+man	snRNA	2613639	2613761	.	+	.	ID=Dsim\GD_MAKA_SPR_26000306;Name=snRNA:U5:6
dsim_chrU	blastn+mfold+man	snRNA	7669198	7669325	.	+	.	ID=Dsim\GD_MAKA_SPR_26000307;Name=snRNA:U5:7
dsim_chrX	blastn+mfold+man	snRNA	12468614	12468741	.	-	.	ID=Dsim\GD_MAKA_SPR_26000308;Name=snRNA:U5:8
dsim_chr3R	blastn+mfold+man	snRNA	20220468	20220574	.	+	.	ID=Dsim\GD_MAKA_SPR_26000309;Name=snRNA:U6:1
dsim_chr3R	blastn+mfold+man	snRNA	20221058	20221164	.	+	.	ID=Dsim\GD_MAKA_SPR_26000310;Name=snRNA:U6:2
dsim_chr3R	blastn+mfold+man	snRNA	20221600	20221706	.	+	.	ID=Dsim\GD_MAKA_SPR_26000311;Name=snRNA:U6:3
dsim_chr2L	blastn+mfold+man	snRNA	8176282	8176378	.	+	.	ID=Dsim\GD_MAKA_SPR_26000312;Name=snRNA:U6atac:1