##gff-version 3
#species: Drosophila pseudoobscura
#assembly-id: CAF1
#annotation-group: MAKA (see Mount, Gotea, Lin, Hernandez and Makalowski. 2007. "Spliceosomal small nuclear RNA genes in 11 insect genomes." RNA 13:5-14.)
#algorithm: SPR (SPliceosomal RNA; BLASTN 2.2.10 + MFOLD 3.1.2 + manual)
#authors: smount@umd.edu, vgotea@psu.edu, cxl46@psu.edu, wojtek@psu.edu
dpse_chr2	blastn+mfold+man	snRNA	453789	453953	.	+	.	ID=Dpse\GA_MAKA_SPR_26000188;Name=snRNA:U1:1
dpse_chr2	blastn+mfold+man	snRNA	12903243	12903407	.	+	.	ID=Dpse\GA_MAKA_SPR_26000189;Name=snRNA:U1:2
dpse_chr2	blastn+mfold+man	snRNA	12905337	12905501	.	+	.	ID=Dpse\GA_MAKA_SPR_26000190;Name=snRNA:U1:3
dpse_chr2	blastn+mfold+man	snRNA	12907261	12907425	.	+	.	ID=Dpse\GA_MAKA_SPR_26000191;Name=snRNA:U1:4
dpse_chr2	blastn+mfold+man	snRNA	12924974	12925138	.	-	.	ID=Dpse\GA_MAKA_SPR_26000192;Name=snRNA:U1:5
dpse_chr2	blastn+mfold+man	snRNA	12926661	12926825	.	-	.	ID=Dpse\GA_MAKA_SPR_26000193;Name=snRNA:U1:6
dpse_chr2	blastn+mfold+man	snRNA	12927756	12927919	.	+	.	ID=Dpse\GA_MAKA_SPR_26000194;Name=snRNA:U1:7
dpse_chrXR_group6	blastn+mfold+man	snRNA	4962241	4962551	.	-	.	ID=Dpse\GA_MAKA_SPR_26000195;Name=snRNA:U11:1
dpse_chrXR_group8	blastn+mfold+man	snRNA	8508263	8508519	.	+	.	ID=Dpse\GA_MAKA_SPR_26000196;Name=snRNA:U12:1
dpse_chr4_group4	blastn+mfold+man	snRNA	4003512	4003704	.	-	.	ID=Dpse\GA_MAKA_SPR_26000197;Name=snRNA:U2:1
dpse_chr4_group4	blastn+mfold+man	snRNA	4093283	4093475	.	+	.	ID=Dpse\GA_MAKA_SPR_26000198;Name=snRNA:U2:2
dpse_chr4_group4	blastn+mfold+man	snRNA	4123401	4123592	.	+	.	ID=Dpse\GA_MAKA_SPR_26000199;Name=snRNA:U2:3
dpse_chr4_group4	blastn+mfold+man	snRNA	4126386	4126577	.	-	.	ID=Dpse\GA_MAKA_SPR_26000200;Name=snRNA:U2:4
dpse_chr4_group5	blastn+mfold+man	snRNA	89763	89954	.	-	.	ID=Dpse\GA_MAKA_SPR_26000201;Name=snRNA:U2:5
dpse_chr4_group5	blastn+mfold+man	snRNA	106136	106327	.	-	.	ID=Dpse\GA_MAKA_SPR_26000202;Name=snRNA:U2:6
dpse_Unknown_singleton_726	blastn+mfold+man	snRNA	1637	1828	.	+	.	ID=Dpse\GA_MAKA_SPR_26000203;Name=snRNA:U2:7
dpse_chr4_group4	blastn+mfold+man	snRNA	3277162	3277314	.	-	.	ID=Dpse\GA_MAKA_SPR_26000204;Name=snRNA:U4:1
dpse_chr4_group4	blastn+mfold+man	snRNA	3297762	3297904	.	-	.	ID=Dpse\GA_MAKA_SPR_26000205;Name=snRNA:U4:2
dpse_chr4_group4	blastn+mfold+man	snRNA	4006284	4006425	.	-	.	ID=Dpse\GA_MAKA_SPR_26000206;Name=snRNA:U4:3
dpse_chr2	blastn+mfold+man	snRNA	21770161	21770325	.	+	.	ID=Dpse\GA_MAKA_SPR_26000207;Name=snRNA:U4atac:1
dpse_chr2	blastn+mfold+man	snRNA	4097733	4097860	.	-	.	ID=Dpse\GA_MAKA_SPR_26000208;Name=snRNA:U5:1
dpse_chr4_group4	blastn+mfold+man	snRNA	4004445	4004529	.	+	.	ID=Dpse\GA_MAKA_SPR_26000209;Name=snRNA:U5:2;Note=the 3' end is missing in the Ns in the assembly
dpse_chr4_group4	blastn+mfold+man	snRNA	4008778	4008909	.	-	.	ID=Dpse\GA_MAKA_SPR_26000210;Name=snRNA:U5:3
dpse_chr4_group4	blastn+mfold+man	snRNA	4092728	4092855	.	-	.	ID=Dpse\GA_MAKA_SPR_26000211;Name=snRNA:U5:4
dpse_chr4_group4	blastn+mfold+man	snRNA	4122692	4122819	.	-	.	ID=Dpse\GA_MAKA_SPR_26000212;Name=snRNA:U5:5
dpse_chr4_group4	blastn+mfold+man	snRNA	4127635	4127762	.	+	.	ID=Dpse\GA_MAKA_SPR_26000213;Name=snRNA:U5:6
dpse_chrXR_group8	blastn+mfold+man	snRNA	3955874	3955997	.	+	.	ID=Dpse\GA_MAKA_SPR_26000214;Name=snRNA:U5:7
dpse_chr2	blastn+mfold+man	snRNA	30714872	30714978	.	-	.	ID=Dpse\GA_MAKA_SPR_26000215;Name=snRNA:U6:1
dpse_chr2	blastn+mfold+man	snRNA	30715588	30715694	.	-	.	ID=Dpse\GA_MAKA_SPR_26000216;Name=snRNA:U6:2
dpse_chr2	blastn+mfold+man	snRNA	30716383	30716489	.	-	.	ID=Dpse\GA_MAKA_SPR_26000217;Name=snRNA:U6:3
dpse_chr4_group1	blastn+mfold+man	snRNA	4121067	4121163	.	-	.	ID=Dpse\GA_MAKA_SPR_26000218;Name=snRNA:U6atac:1