SNP Discovery and Genotyping

Please read pp. 271-292 in Spencer and Muse.

Please also read the following papers.

1. Syvanen, AC 2001 Accessing Genetic variation: genotyping SNPs. Nature Reviews Genetics 2: 930-941. [PDF]

2. Primmer, CR et al 2002 Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome. Molecular Ecology 11: 603-612. [PDF]

3. Jean-Claude Nicod and Carlo R. Largiadèr 2003 SNPs by AFLP (SBA): a rapid SNP isolation strategy for non-model organisms. Nucl. Acids. Res. 2003 31: 19 [PDF]